AJR24634.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24634.1

Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)

Predicted Functional Partners:

AJR24449.1

0.886

AJR24451.1

0.869

AJR24450.1

0.843

AJR24499.1

0.828

AJR22610.1

0.800

AJR24635.1

0.753

AJR22959.1

0.746

AJR23621.1

0.741

AJR22960.1

0.706

AJR24633.1

0.647

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22610.1	AJR24634.1	TZ53_01220	TZ53_13755	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJR22959.1	AJR22960.1	TZ53_03440	TZ53_03445	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22959.1	AJR24450.1	TZ53_03440	TZ53_12670	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJR22959.1	AJR24451.1	TZ53_03440	TZ53_12675	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
AJR22959.1	AJR24499.1	TZ53_03440	TZ53_12980	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AJR22959.1	AJR24634.1	TZ53_03440	TZ53_13755	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR22960.1	AJR22959.1	TZ53_03445	TZ53_03440	Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22960.1	AJR24449.1	TZ53_03445	TZ53_12665	Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR22960.1	AJR24634.1	TZ53_03445	TZ53_13755	Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJR23621.1	AJR24449.1	TZ53_07725	TZ53_12665	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AJR23621.1	AJR24450.1	TZ53_07725	TZ53_12670	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AJR23621.1	AJR24633.1	TZ53_07725	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AJR23621.1	AJR24634.1	TZ53_07725	TZ53_13755	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR23621.1	AJR24635.1	TZ53_07725	TZ53_13760	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AJR24449.1	AJR22960.1	TZ53_12665	TZ53_03445	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24449.1	AJR23621.1	TZ53_12665	TZ53_07725	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AJR24449.1	AJR24450.1	TZ53_12665	TZ53_12670	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR24449.1	AJR24451.1	TZ53_12665	TZ53_12675	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR24449.1	AJR24499.1	TZ53_12665	TZ53_12980	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AJR24449.1	AJR24633.1	TZ53_12665	TZ53_13750	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521