Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR24660.14-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
AJR24806.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.799
AJR22548.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
AJR22437.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
AJR24805.1
Phosphatidylglycerophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.757
AJR24804.1
HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.738
AJR22442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.701
AJR24802.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.678
AJR22891.1
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
AJR24659.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.660
AJR23008.1
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.657
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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