STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24683.1Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)    
Predicted Functional Partners:
AJR24684.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.903
AJR24685.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.780
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.637
AJR24864.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.637
folE
GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.614
AJR24686.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.579
AJR23681.1
Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
AJR24687.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.429
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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