AJR24685.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24685.1

Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)

Predicted Functional Partners:

AJR24684.1

0.819

AJR24683.1

0.773

AJR24686.1

0.567

AJR24267.1

0.493

AJR25614.1

0.487

AJR23269.1

0.485

AJR26186.1

0.481

AJR25448.1

0.481

AJR23267.1

0.472

AJR25376.1

0.467

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23267.1	AJR23269.1	TZ53_05350	TZ53_05360	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.612
AJR23267.1	AJR24685.1	TZ53_05350	TZ53_14060	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR23269.1	AJR23267.1	TZ53_05360	TZ53_05350	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.612
AJR23269.1	AJR24685.1	TZ53_05360	TZ53_14060	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AJR24267.1	AJR24685.1	TZ53_11565	TZ53_14060	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJR24683.1	AJR24684.1	TZ53_14050	TZ53_14055	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJR24683.1	AJR24685.1	TZ53_14050	TZ53_14060	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR24683.1	AJR24686.1	TZ53_14050	TZ53_14065	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR24684.1	AJR24683.1	TZ53_14055	TZ53_14050	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJR24684.1	AJR24685.1	TZ53_14055	TZ53_14060	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR24684.1	AJR24686.1	TZ53_14055	TZ53_14065	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR24685.1	AJR23267.1	TZ53_14060	TZ53_05350	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.472
AJR24685.1	AJR23269.1	TZ53_14060	TZ53_05360	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.485
AJR24685.1	AJR24267.1	TZ53_14060	TZ53_11565	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJR24685.1	AJR24683.1	TZ53_14060	TZ53_14050	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR24685.1	AJR24684.1	TZ53_14060	TZ53_14055	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR24685.1	AJR24686.1	TZ53_14060	TZ53_14065	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR24685.1	AJR25376.1	TZ53_14060	TZ53_18235	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.467
AJR24685.1	AJR25448.1	TZ53_14060	TZ53_18635	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.481
AJR24685.1	AJR25614.1	TZ53_14060	TZ53_19625	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.487