Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AJR24722.1Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (352 aa)    
Predicted Functional Partners:
AJR24723.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.995
AJR24761.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
AJR24083.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.969
AJR23481.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.964
AJR25644.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.963
AJR23457.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.951
AJR25062.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
AJR24082.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.887
AJR23873.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
AJR23456.1
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.846
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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