AJR24754.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24754.1

Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)

Predicted Functional Partners:

AJR24755.1

0.950

AJR24399.1

0.943

AJR25463.1

0.943

AJR26317.1

0.878

AJR22842.1

0.812

polA

0.792

AJR24200.1

0.791

AJR24400.1

0.783

AJR24756.1

0.775

AJR25261.1

0.741

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22842.1	AJR24754.1	TZ53_02700	TZ53_14495	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJR22842.1	AJR25463.1	TZ53_02700	TZ53_18730	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	0.508
AJR22842.1	AJR26317.1	TZ53_02700	TZ53_10630	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AJR22842.1	polA	TZ53_02700	TZ53_02645	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.994
AJR24200.1	AJR24754.1	TZ53_11155	TZ53_14495	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR24200.1	AJR25261.1	TZ53_11155	TZ53_17550	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
AJR24399.1	AJR24400.1	TZ53_12340	TZ53_12345	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJR24399.1	AJR24754.1	TZ53_12340	TZ53_14495	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AJR24399.1	AJR26317.1	TZ53_12340	TZ53_10630	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AJR24399.1	polA	TZ53_12340	TZ53_02645	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.524
AJR24400.1	AJR24399.1	TZ53_12345	TZ53_12340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	0.949
AJR24400.1	AJR24754.1	TZ53_12345	TZ53_14495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR24400.1	AJR26317.1	TZ53_12345	TZ53_10630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AJR24400.1	polA	TZ53_12345	TZ53_02645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.524
AJR24754.1	AJR22842.1	TZ53_14495	TZ53_02700	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.812
AJR24754.1	AJR24200.1	TZ53_14495	TZ53_11155	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR24754.1	AJR24399.1	TZ53_14495	TZ53_12340	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.	0.943
AJR24754.1	AJR24400.1	TZ53_14495	TZ53_12345	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR24754.1	AJR24755.1	TZ53_14495	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR24754.1	AJR24756.1	TZ53_14495	TZ53_14505	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775