AJR24755.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene fusions

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[Homology]

Score

AJR24755.1

Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)

Predicted Functional Partners:

AJR24754.1

0.950

AJR24199.1

0.791

AJR24756.1

0.779

AJR23345.1

0.764

AJR25331.1

0.749

AJR25264.1

0.729

AJR26479.1

0.724

AJR23356.1

0.711

AJR25261.1

0.711

AJR25267.1

0.702

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23345.1	AJR24755.1	TZ53_05895	TZ53_14500	DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJR23356.1	AJR24199.1	TZ53_05975	TZ53_11150	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJR23356.1	AJR24754.1	TZ53_05975	TZ53_14495	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AJR23356.1	AJR24755.1	TZ53_05975	TZ53_14500	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR23356.1	AJR25264.1	TZ53_05975	TZ53_17575	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR23356.1	AJR25267.1	TZ53_05975	TZ53_17590	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR23356.1	AJR26479.1	TZ53_05975	TZ53_17560	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR24199.1	AJR23356.1	TZ53_11150	TZ53_05975	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJR24199.1	AJR24755.1	TZ53_11150	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR24199.1	AJR25261.1	TZ53_11150	TZ53_17550	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJR24199.1	AJR25264.1	TZ53_11150	TZ53_17575	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AJR24199.1	AJR25267.1	TZ53_11150	TZ53_17590	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR24199.1	AJR26479.1	TZ53_11150	TZ53_17560	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AJR24754.1	AJR23356.1	TZ53_14495	TZ53_05975	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AJR24754.1	AJR24755.1	TZ53_14495	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR24754.1	AJR24756.1	TZ53_14495	TZ53_14505	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR24754.1	AJR25261.1	TZ53_14495	TZ53_17550	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR24754.1	AJR25264.1	TZ53_14495	TZ53_17575	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AJR24754.1	AJR25267.1	TZ53_14495	TZ53_17590	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AJR24754.1	AJR26479.1	TZ53_14495	TZ53_17560	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725