Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AJR24763.1Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)    
Predicted Functional Partners:
AJR26522.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.632
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.623
AJR25282.1
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
AJR22970.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.598
AJR25204.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.595
AJR24762.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
AJR26275.1
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
  
 0.521
AJR25456.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.510
AJR24761.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
AJR24760.1
protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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