AJR24780.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24780.1

Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)

Predicted Functional Partners:

AJR23697.1

0.877

AJR24797.1

0.875

AJR25050.1

0.875

AJR23698.1

0.874

AJR25051.1

0.874

AJR24796.1

0.873

AJR26411.1

0.865

AJR25042.1

0.865

AJR25048.1

0.865

AJR23693.1

0.864

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23693.1	AJR23697.1	TZ53_08160	TZ53_08180	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR23693.1	AJR23698.1	TZ53_08160	TZ53_08185	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR23693.1	AJR24780.1	TZ53_08160	TZ53_14650	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AJR23693.1	AJR24796.1	TZ53_08160	TZ53_14765	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AJR23693.1	AJR24797.1	TZ53_08160	TZ53_14770	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR23693.1	AJR25042.1	TZ53_08160	TZ53_16235	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AJR23693.1	AJR25048.1	TZ53_08160	TZ53_16265	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AJR23693.1	AJR25050.1	TZ53_08160	TZ53_16275	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJR23693.1	AJR25051.1	TZ53_08160	TZ53_16280	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AJR23697.1	AJR23693.1	TZ53_08180	TZ53_08160	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR23697.1	AJR23698.1	TZ53_08180	TZ53_08185	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR23697.1	AJR24780.1	TZ53_08180	TZ53_14650	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AJR23697.1	AJR24796.1	TZ53_08180	TZ53_14765	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR23697.1	AJR25042.1	TZ53_08180	TZ53_16235	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AJR23697.1	AJR25048.1	TZ53_08180	TZ53_16265	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AJR23697.1	AJR25051.1	TZ53_08180	TZ53_16280	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR23697.1	AJR26411.1	TZ53_08180	TZ53_14790	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJR23698.1	AJR23693.1	TZ53_08185	TZ53_08160	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR23698.1	AJR23697.1	TZ53_08185	TZ53_08180	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR23698.1	AJR24780.1	TZ53_08185	TZ53_14650	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874