AJR24799.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR24799.1

Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)

Predicted Functional Partners:

AJR24798.1

0.937

AJR26411.1

0.900

AJR26412.1

0.896

AJR24800.1

0.834

AJR24796.1

0.803

AJR25140.1

0.778

AJR25105.1

0.775

AJR25141.1

0.772

AJR25142.1

0.768

AJR22555.1

0.761

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22555.1	AJR24798.1	TZ53_00885	TZ53_14775	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR22555.1	AJR24799.1	TZ53_00885	TZ53_14780	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AJR22555.1	AJR25105.1	TZ53_00885	TZ53_16585	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AJR22555.1	AJR25140.1	TZ53_00885	TZ53_16810	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tight adherence protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AJR22555.1	AJR25141.1	TZ53_00885	TZ53_16815	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tight adherence protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR22555.1	AJR25142.1	TZ53_00885	TZ53_16820	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR22555.1	AJR26411.1	TZ53_00885	TZ53_14790	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AJR22555.1	AJR26412.1	TZ53_00885	TZ53_14795	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
AJR24796.1	AJR24798.1	TZ53_14765	TZ53_14775	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24796.1	AJR24799.1	TZ53_14765	TZ53_14780	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR24796.1	AJR24800.1	TZ53_14765	TZ53_14785	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.941
AJR24796.1	AJR25105.1	TZ53_14765	TZ53_16585	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR24796.1	AJR25140.1	TZ53_14765	TZ53_16810	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tight adherence protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AJR24796.1	AJR25141.1	TZ53_14765	TZ53_16815	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tight adherence protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJR24796.1	AJR25142.1	TZ53_14765	TZ53_16820	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AJR24796.1	AJR26411.1	TZ53_14765	TZ53_14790	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24796.1	AJR26412.1	TZ53_14765	TZ53_14795	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AJR24798.1	AJR22555.1	TZ53_14775	TZ53_00885	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR24798.1	AJR24796.1	TZ53_14775	TZ53_14765	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24798.1	AJR24799.1	TZ53_14775	TZ53_14780	Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937