STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24889.1Type II secretion system protein N; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)    
Predicted Functional Partners:
AJR24888.1
Type II secretory protein PulM; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.863
AJR26421.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.861
AJR24887.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.861
AJR26422.1
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.861
AJR24890.1
Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.790
AJR24886.1
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
AJR24884.1
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
AJR24885.1
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
AJR24883.1
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
AJR26420.1
General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.488
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.