AJR26428.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR26428.1

Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)

Predicted Functional Partners:

AJR24910.1

0.817

AJR25155.1

0.665

AJR24909.1

0.526

AJR25752.1

0.518

AJR26429.1

0.499

AJR22981.1

0.496

AJR26341.1

0.441

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22981.1	AJR26428.1	TZ53_03565	TZ53_15435	Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
AJR24909.1	AJR24910.1	TZ53_15440	TZ53_15445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR24909.1	AJR26428.1	TZ53_15440	TZ53_15435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR24909.1	AJR26429.1	TZ53_15440	TZ53_15450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR24910.1	AJR24909.1	TZ53_15445	TZ53_15440	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR24910.1	AJR26428.1	TZ53_15445	TZ53_15435	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJR24910.1	AJR26429.1	TZ53_15445	TZ53_15450	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR25155.1	AJR26428.1	TZ53_16900	TZ53_15435	Cell wall degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJR25752.1	AJR26341.1	TZ53_20385	TZ53_11545	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AJR25752.1	AJR26428.1	TZ53_20385	TZ53_15435	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJR26341.1	AJR25752.1	TZ53_11545	TZ53_20385	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AJR26341.1	AJR26428.1	TZ53_11545	TZ53_15435	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR26428.1	AJR22981.1	TZ53_15435	TZ53_03565	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
AJR26428.1	AJR24909.1	TZ53_15435	TZ53_15440	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR26428.1	AJR24910.1	TZ53_15435	TZ53_15445	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJR26428.1	AJR25155.1	TZ53_15435	TZ53_16900	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJR26428.1	AJR25752.1	TZ53_15435	TZ53_20385	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJR26428.1	AJR26341.1	TZ53_15435	TZ53_11545	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR26428.1	AJR26429.1	TZ53_15435	TZ53_15450	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR26429.1	AJR24909.1	TZ53_15450	TZ53_15440	Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565