AJR24926.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

AJR24926.1

Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)

Predicted Functional Partners:

AJR24924.1

0.973

AJR24925.1

0.969

AJR24932.1

0.951

AJR24930.1

0.948

AJR24931.1

0.948

AJR24929.1

0.947

AJR24928.1

0.943

AJR24933.1

0.917

AJR25760.1

0.912

AJR24934.1

0.869

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24924.1	AJR24925.1	TZ53_15540	TZ53_15545	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR24924.1	AJR24926.1	TZ53_15540	TZ53_15550	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AJR24924.1	AJR24928.1	TZ53_15540	TZ53_15560	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AJR24924.1	AJR24929.1	TZ53_15540	TZ53_15565	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJR24924.1	AJR24930.1	TZ53_15540	TZ53_15570	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24924.1	AJR24931.1	TZ53_15540	TZ53_15575	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR24924.1	AJR24932.1	TZ53_15540	TZ53_15580	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24924.1	AJR24933.1	TZ53_15540	TZ53_15585	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJR24924.1	AJR24934.1	TZ53_15540	TZ53_15590	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR24924.1	AJR25760.1	TZ53_15540	TZ53_20440	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR24925.1	AJR24924.1	TZ53_15545	TZ53_15540	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJR24925.1	AJR24926.1	TZ53_15545	TZ53_15550	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR24925.1	AJR24928.1	TZ53_15545	TZ53_15560	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24929.1	TZ53_15545	TZ53_15565	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24930.1	TZ53_15545	TZ53_15570	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24931.1	TZ53_15545	TZ53_15575	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR24925.1	AJR24932.1	TZ53_15545	TZ53_15580	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24933.1	TZ53_15545	TZ53_15585	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJR24925.1	AJR24934.1	TZ53_15545	TZ53_15590	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
AJR24925.1	AJR25760.1	TZ53_15545	TZ53_20440	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905