STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24929.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)    
Predicted Functional Partners:
AJR24931.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
AJR24930.1
FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.967
AJR24932.1
Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.967
AJR24928.1
General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.965
AJR24933.1
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.959
AJR24924.1
Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
AJR24925.1
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.948
AJR24926.1
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.947
AJR26433.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
AJR24923.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.