AJR24935.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24935.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)

Predicted Functional Partners:

AJR24934.1

0.830

AJR24937.1

0.689

AJR23789.1

0.658

AJR24699.1

0.641

AJR24936.1

0.608

AJR24938.1

0.588

AJR24926.1

0.558

AJR24932.1

0.542

AJR24925.1

0.540

AJR24929.1

0.538

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23789.1	AJR24699.1	TZ53_08710	TZ53_14155	Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR23789.1	AJR24935.1	TZ53_08710	TZ53_15595	Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
AJR24699.1	AJR23789.1	TZ53_14155	TZ53_08710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR24699.1	AJR24935.1	TZ53_14155	TZ53_15595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR24925.1	AJR24926.1	TZ53_15545	TZ53_15550	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AJR24925.1	AJR24929.1	TZ53_15545	TZ53_15565	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24932.1	TZ53_15545	TZ53_15580	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24925.1	AJR24934.1	TZ53_15545	TZ53_15590	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AJR24925.1	AJR24935.1	TZ53_15545	TZ53_15595	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJR24925.1	AJR24938.1	TZ53_15545	TZ53_15615	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FkbM family methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR24926.1	AJR24925.1	TZ53_15550	TZ53_15545	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AJR24926.1	AJR24929.1	TZ53_15550	TZ53_15565	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AJR24926.1	AJR24932.1	TZ53_15550	TZ53_15580	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24926.1	AJR24934.1	TZ53_15550	TZ53_15590	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJR24926.1	AJR24935.1	TZ53_15550	TZ53_15595	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJR24929.1	AJR24925.1	TZ53_15565	TZ53_15545	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR24929.1	AJR24926.1	TZ53_15565	TZ53_15550	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AJR24929.1	AJR24932.1	TZ53_15565	TZ53_15580	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AJR24929.1	AJR24934.1	TZ53_15565	TZ53_15590	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AJR24929.1	AJR24935.1	TZ53_15565	TZ53_15595	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538