AJR24948.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR24948.1

Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)

Predicted Functional Partners:

AJR24949.1

0.923

AJR23712.1

0.814

AJR23955.1

0.814

AJR25881.1

0.814

gmk

0.721

AJR26436.1

0.721

AJR23546.1

0.695

AJR24360.1

0.646

AJR25573.1

0.621

AJR22922.1

0.618

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22922.1	AJR24948.1	TZ53_03240	TZ53_15670	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
AJR23546.1	AJR24948.1	TZ53_07230	TZ53_15670	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AJR23546.1	AJR24949.1	TZ53_07230	TZ53_15680	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJR23546.1	AJR25573.1	TZ53_07230	TZ53_19375	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR23712.1	AJR24948.1	TZ53_08260	TZ53_15670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR23712.1	AJR25573.1	TZ53_08260	TZ53_19375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
AJR23955.1	AJR24948.1	TZ53_09695	TZ53_15670	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR23955.1	AJR25573.1	TZ53_09695	TZ53_19375	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
AJR24360.1	AJR24948.1	TZ53_12085	TZ53_15670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR24360.1	AJR24949.1	TZ53_12085	TZ53_15680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AJR24360.1	AJR25881.1	TZ53_12085	TZ53_21180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
AJR24948.1	AJR22922.1	TZ53_15670	TZ53_03240	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.618
AJR24948.1	AJR23546.1	TZ53_15670	TZ53_07230	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AJR24948.1	AJR23712.1	TZ53_15670	TZ53_08260	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR24948.1	AJR23955.1	TZ53_15670	TZ53_09695	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR24948.1	AJR24360.1	TZ53_15670	TZ53_12085	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR24948.1	AJR24949.1	TZ53_15670	TZ53_15680	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AJR24948.1	AJR25573.1	TZ53_15670	TZ53_19375	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AJR24948.1	AJR25881.1	TZ53_15670	TZ53_21180	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR24948.1	AJR26436.1	TZ53_15670	TZ53_15675	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.721