Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR26448.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1806 aa)    
Predicted Functional Partners:
AJR26449.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.676
AJR26450.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.637
AJR23430.1
Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.631
AJR25573.1
Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.602
AJR26573.1
Pilus assembly protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.562
AJR25992.1
Pilus assembly protein PapD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.540
AJR22801.1
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.539
AJR23712.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.538
AJR23955.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.538
AJR25881.1
Xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.538
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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