Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR26450.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
AJR26449.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.924
AJR25062.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.919
AJR25063.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.812
AJR23002.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.765
AJR24761.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.762
AJR25564.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.760
AJR23482.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.735
AJR25643.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.732
AJR25065.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.706
AJR22621.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.696
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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