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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR26450.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
AJR26449.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.899
AJR25062.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.876
AJR25063.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.813
AJR23002.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.754
AJR25564.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.748
AJR25065.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.710
AJR24761.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.638
AJR26448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.636
AJR23482.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.606
AJR25643.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.602
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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