STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR25047.1Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
AJR25045.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
AJR25052.1
Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.927
AJR25051.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.924
AJR25048.1
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.923
AJR25050.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.912
AJR25049.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
AJR25042.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.861
AJR25043.1
Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
 
  
 0.830
AJR25053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
AJR25054.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.