AJR25065.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25065.1

Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)

Predicted Functional Partners:

AJR25062.1

0.780

AJR25063.1

0.742

AJR25064.1

0.721

AJR26450.1

0.706

AJR25083.1

0.531

AJR23001.1

0.519

AJR25565.1

0.498

parE

0.476

AJR26449.1

0.418

AJR25936.1

0.408

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23001.1	AJR25062.1	TZ53_03670	TZ53_16350	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR23001.1	AJR25063.1	TZ53_03670	TZ53_16355	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23001.1	AJR25064.1	TZ53_03670	TZ53_16365	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR23001.1	AJR25065.1	TZ53_03670	TZ53_16370	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJR23001.1	AJR26449.1	TZ53_03670	TZ53_16105	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR25062.1	AJR23001.1	TZ53_16350	TZ53_03670	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AJR25062.1	AJR25063.1	TZ53_16350	TZ53_16355	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25062.1	AJR25064.1	TZ53_16350	TZ53_16365	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AJR25062.1	AJR25065.1	TZ53_16350	TZ53_16370	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR25062.1	AJR25565.1	TZ53_16350	TZ53_19335	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR25062.1	AJR26449.1	TZ53_16350	TZ53_16105	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR25062.1	AJR26450.1	TZ53_16350	TZ53_16115	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR25063.1	AJR23001.1	TZ53_16355	TZ53_03670	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR25063.1	AJR25062.1	TZ53_16355	TZ53_16350	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25063.1	AJR25064.1	TZ53_16355	TZ53_16365	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJR25063.1	AJR25065.1	TZ53_16355	TZ53_16370	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR25063.1	AJR25565.1	TZ53_16355	TZ53_19335	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR25063.1	AJR26449.1	TZ53_16355	TZ53_16105	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR25063.1	AJR26450.1	TZ53_16355	TZ53_16115	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
AJR25064.1	AJR23001.1	TZ53_16365	TZ53_03670	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592