AJR25065.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25065.1

Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)

Predicted Functional Partners:

AJR25062.1

0.782

AJR25063.1

0.742

AJR25064.1

0.721

AJR26450.1

0.710

AJR25083.1

0.695

AJR23001.1

0.527

AJR25565.1

0.505

parE

0.486

AJR26449.1

0.424

AJR25936.1

0.405

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23001.1	AJR25062.1	TZ53_03670	TZ53_16350	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJR23001.1	AJR25063.1	TZ53_03670	TZ53_16355	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR23001.1	AJR25065.1	TZ53_03670	TZ53_16370	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJR23001.1	AJR26449.1	TZ53_03670	TZ53_16105	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AJR25062.1	AJR23001.1	TZ53_16350	TZ53_03670	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJR25062.1	AJR25063.1	TZ53_16350	TZ53_16355	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25062.1	AJR25064.1	TZ53_16350	TZ53_16365	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR25062.1	AJR25065.1	TZ53_16350	TZ53_16370	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25062.1	AJR25565.1	TZ53_16350	TZ53_19335	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AJR25062.1	AJR26449.1	TZ53_16350	TZ53_16105	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
AJR25062.1	AJR26450.1	TZ53_16350	TZ53_16115	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AJR25063.1	AJR23001.1	TZ53_16355	TZ53_03670	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR25063.1	AJR25062.1	TZ53_16355	TZ53_16350	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25063.1	AJR25064.1	TZ53_16355	TZ53_16365	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJR25063.1	AJR25065.1	TZ53_16355	TZ53_16370	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR25063.1	AJR25565.1	TZ53_16355	TZ53_19335	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR25063.1	AJR26449.1	TZ53_16355	TZ53_16105	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJR25063.1	AJR26450.1	TZ53_16355	TZ53_16115	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR25064.1	AJR25062.1	TZ53_16365	TZ53_16350	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR25064.1	AJR25063.1	TZ53_16365	TZ53_16355	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921