Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25098.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)    
Predicted Functional Partners:
AJR25099.1
Molybdenum cofactor biosysynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.606
AJR24462.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.598
AJR24265.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
AJR25097.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
AJR26207.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AJR25095.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
AJR25096.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
AJR24331.1
Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
AJR24329.1
Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
AJR24328.1
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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