AJR25101.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25101.1

IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)

Predicted Functional Partners:

AJR25102.1

0.608

purU

0.602

AJR25343.1

0.592

AJR25344.1

0.551

AJR24569.1

0.506

AJR22884.1

0.475

AJR24354.1

0.475

AJR25247.1

0.451

AJR23034.1

0.441

AJR26403.1

0.432

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22884.1	AJR25101.1	TZ53_02995	TZ53_16565	Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR22884.1	purU	TZ53_02995	TZ53_16560	Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).	0.805
AJR23034.1	AJR24569.1	TZ53_03875	TZ53_13405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AJR23034.1	AJR25101.1	TZ53_03875	TZ53_16565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR23034.1	AJR25247.1	TZ53_03875	TZ53_17435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR23034.1	AJR26403.1	TZ53_03875	TZ53_14575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR24354.1	AJR25101.1	TZ53_12045	TZ53_16565	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24569.1	AJR23034.1	TZ53_13405	TZ53_03875	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AJR24569.1	AJR25101.1	TZ53_13405	TZ53_16565	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR24569.1	AJR26403.1	TZ53_13405	TZ53_14575	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR25101.1	AJR22884.1	TZ53_16565	TZ53_02995	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.475
AJR25101.1	AJR23034.1	TZ53_16565	TZ53_03875	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR25101.1	AJR24354.1	TZ53_16565	TZ53_12045	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR25101.1	AJR24569.1	TZ53_16565	TZ53_13405	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR25101.1	AJR25102.1	TZ53_16565	TZ53_16570	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AJR25101.1	AJR25247.1	TZ53_16565	TZ53_17435	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJR25101.1	AJR25343.1	TZ53_16565	TZ53_18060	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR25101.1	AJR25344.1	TZ53_16565	TZ53_18065	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AJR25101.1	AJR26403.1	TZ53_16565	TZ53_14575	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AJR25101.1	purU	TZ53_16565	TZ53_16560	IQ calmodulin-binding motif-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).	0.602