AJR26457.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR26457.1

Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)

Predicted Functional Partners:

AJR23742.1

0.865

AJR23743.1

0.756

AJR23741.1

0.686

AJR23753.1

0.653

AJR23752.1

0.647

AJR23749.1

0.565

AJR23733.1

0.552

AJR23754.1

0.525

AJR23597.1

0.472

AJR26291.1

0.434

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23597.1	AJR23743.1	TZ53_07595	TZ53_08440	Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AJR23597.1	AJR26457.1	TZ53_07595	TZ53_16615	Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR23733.1	AJR23741.1	TZ53_08385	TZ53_08430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AJR23733.1	AJR23742.1	TZ53_08385	TZ53_08435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR23733.1	AJR23743.1	TZ53_08385	TZ53_08440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJR23733.1	AJR23749.1	TZ53_08385	TZ53_08470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR23733.1	AJR23752.1	TZ53_08385	TZ53_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR23733.1	AJR23753.1	TZ53_08385	TZ53_08490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJR23733.1	AJR23754.1	TZ53_08385	TZ53_08495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJR23733.1	AJR26457.1	TZ53_08385	TZ53_16615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR23741.1	AJR23733.1	TZ53_08430	TZ53_08385	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AJR23741.1	AJR23742.1	TZ53_08430	TZ53_08435	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR23741.1	AJR23743.1	TZ53_08430	TZ53_08440	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJR23741.1	AJR23749.1	TZ53_08430	TZ53_08470	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR23741.1	AJR23752.1	TZ53_08430	TZ53_08485	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJR23741.1	AJR23753.1	TZ53_08430	TZ53_08490	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR23741.1	AJR23754.1	TZ53_08430	TZ53_08495	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJR23741.1	AJR26457.1	TZ53_08430	TZ53_16615	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AJR23742.1	AJR23733.1	TZ53_08435	TZ53_08385	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR23742.1	AJR23741.1	TZ53_08435	TZ53_08430	Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969