AJR25137.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25137.1

Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)

Predicted Functional Partners:

ftsQ

0.979

AJR22569.1

0.936

AJR22564.1

0.929

AJR25594.1

0.928

mrdB

0.920

ftsA

0.828

AJR24016.1

0.793

ftsZ

0.790

eno

0.765

AJR26074.1

0.753

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22564.1	AJR22569.1	TZ53_00930	TZ53_00955	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJR22564.1	AJR24016.1	TZ53_00930	TZ53_10090	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJR22564.1	AJR25137.1	TZ53_00930	TZ53_16795	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJR22564.1	AJR25594.1	TZ53_00930	TZ53_19490	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR22564.1	AJR26074.1	TZ53_00930	TZ53_01030	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR22564.1	ftsA	TZ53_00930	TZ53_00895	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.985
AJR22564.1	ftsQ	TZ53_00930	TZ53_00900	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.	0.997
AJR22564.1	ftsZ	TZ53_00930	TZ53_00890	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.	0.963
AJR22564.1	mrdB	TZ53_00930	TZ53_19495	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.939
AJR22569.1	AJR22564.1	TZ53_00955	TZ53_00930	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	0.998
AJR22569.1	AJR24016.1	TZ53_00955	TZ53_10090	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR22569.1	AJR25137.1	TZ53_00955	TZ53_16795	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJR22569.1	AJR25594.1	TZ53_00955	TZ53_19490	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AJR22569.1	AJR26074.1	TZ53_00955	TZ53_01030	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJR22569.1	ftsA	TZ53_00955	TZ53_00895	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.983
AJR22569.1	ftsQ	TZ53_00955	TZ53_00900	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.	0.994
AJR22569.1	ftsZ	TZ53_00955	TZ53_00890	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.	0.927
AJR22569.1	mrdB	TZ53_00955	TZ53_19495	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.984
AJR24016.1	AJR22564.1	TZ53_10090	TZ53_00930	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	0.792
AJR24016.1	AJR22569.1	TZ53_10090	TZ53_00955	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773