STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR25189.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)    
Predicted Functional Partners:
AJR25191.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.837
AJR25190.1
acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
AJR23742.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.787
AJR25188.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.783
AJR25187.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AJR26467.1
Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AJR25192.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
AJR23743.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.689
AJR26466.1
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.657
AJR23741.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.653
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.