AJR25190.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25190.1

acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)

Predicted Functional Partners:

AJR23117.1

0.867

AJR26467.1

0.866

AJR25845.1

0.856

AJR25192.1

0.850

AJR25187.1

0.841

AJR25188.1

0.839

AJR23334.1

0.830

AJR25191.1

0.812

AJR25189.1

0.805

AJR26468.1

0.759

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23117.1	AJR23334.1	TZ53_04395	TZ53_05805	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AJR23117.1	AJR25190.1	TZ53_04395	TZ53_17095	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AJR23117.1	AJR25192.1	TZ53_04395	TZ53_17105	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
AJR23117.1	AJR25845.1	TZ53_04395	TZ53_20955	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
AJR23334.1	AJR23117.1	TZ53_05805	TZ53_04395	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AJR23334.1	AJR25190.1	TZ53_05805	TZ53_17095	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AJR23334.1	AJR25845.1	TZ53_05805	TZ53_20955	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
AJR25187.1	AJR25188.1	TZ53_17075	TZ53_17085	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.924
AJR25187.1	AJR25189.1	TZ53_17075	TZ53_17090	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR25187.1	AJR25190.1	TZ53_17075	TZ53_17095	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AJR25187.1	AJR25191.1	TZ53_17075	TZ53_17100	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25187.1	AJR25192.1	TZ53_17075	TZ53_17105	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AJR25187.1	AJR26467.1	TZ53_17075	TZ53_17080	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR25187.1	AJR26468.1	TZ53_17075	TZ53_17110	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR25188.1	AJR25187.1	TZ53_17085	TZ53_17075	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR25188.1	AJR25189.1	TZ53_17085	TZ53_17090	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJR25188.1	AJR25190.1	TZ53_17085	TZ53_17095	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJR25188.1	AJR25191.1	TZ53_17085	TZ53_17100	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR25188.1	AJR25192.1	TZ53_17085	TZ53_17105	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR25188.1	AJR26467.1	TZ53_17085	TZ53_17080	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990