AJR25191.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25191.1

MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)

Predicted Functional Partners:

AJR25189.1

0.835

AJR25188.1

0.813

AJR25190.1

0.812

AJR26467.1

0.806

AJR25187.1

0.782

AJR25192.1

0.700

AJR26468.1

0.696

AJR26466.1

0.669

AJR26301.1

0.653

AJR25193.1

0.603

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR25187.1	AJR25188.1	TZ53_17075	TZ53_17085	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.924
AJR25187.1	AJR25189.1	TZ53_17075	TZ53_17090	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR25187.1	AJR25190.1	TZ53_17075	TZ53_17095	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AJR25187.1	AJR25191.1	TZ53_17075	TZ53_17100	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25187.1	AJR25192.1	TZ53_17075	TZ53_17105	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AJR25187.1	AJR25193.1	TZ53_17075	TZ53_17115	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AJR25187.1	AJR26466.1	TZ53_17075	TZ53_17070	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR25187.1	AJR26467.1	TZ53_17075	TZ53_17080	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR25187.1	AJR26468.1	TZ53_17075	TZ53_17110	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR25188.1	AJR25187.1	TZ53_17085	TZ53_17075	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR25188.1	AJR25189.1	TZ53_17085	TZ53_17090	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJR25188.1	AJR25190.1	TZ53_17085	TZ53_17095	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJR25188.1	AJR25191.1	TZ53_17085	TZ53_17100	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR25188.1	AJR25192.1	TZ53_17085	TZ53_17105	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR25188.1	AJR25193.1	TZ53_17085	TZ53_17115	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
AJR25188.1	AJR26466.1	TZ53_17085	TZ53_17070	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AJR25188.1	AJR26467.1	TZ53_17085	TZ53_17080	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJR25188.1	AJR26468.1	TZ53_17085	TZ53_17110	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR25189.1	AJR25187.1	TZ53_17090	TZ53_17075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR25189.1	AJR25188.1	TZ53_17090	TZ53_17085	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.779