AJR25199.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25199.1

uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)

Predicted Functional Partners:

AJR26509.1

0.928

AJR24328.1

0.914

AJR25198.1

0.727

AJR25651.1

0.446

polA

0.441

AJR22634.1

0.404

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22634.1	AJR24328.1	TZ53_01360	TZ53_11910	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR22634.1	AJR25199.1	TZ53_01360	TZ53_17150	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR22634.1	AJR26509.1	TZ53_01360	TZ53_19185	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR24328.1	AJR22634.1	TZ53_11910	TZ53_01360	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	0.404
AJR24328.1	AJR25199.1	TZ53_11910	TZ53_17150	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR24328.1	AJR25651.1	TZ53_11910	TZ53_19830	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR24328.1	AJR26509.1	TZ53_11910	TZ53_19185	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR24328.1	polA	TZ53_11910	TZ53_02645	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.500
AJR25198.1	AJR25199.1	TZ53_17145	TZ53_17150	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJR25199.1	AJR22634.1	TZ53_17150	TZ53_01360	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	0.404
AJR25199.1	AJR24328.1	TZ53_17150	TZ53_11910	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR25199.1	AJR25198.1	TZ53_17150	TZ53_17145	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJR25199.1	AJR25651.1	TZ53_17150	TZ53_19830	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR25199.1	AJR26509.1	TZ53_17150	TZ53_19185	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR25199.1	polA	TZ53_17150	TZ53_02645	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.441
AJR25651.1	AJR24328.1	TZ53_19830	TZ53_11910	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR25651.1	AJR25199.1	TZ53_19830	TZ53_17150	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJR25651.1	AJR26509.1	TZ53_19830	TZ53_19185	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AJR26509.1	AJR22634.1	TZ53_19185	TZ53_01360	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.	0.478
AJR26509.1	AJR24328.1	TZ53_19185	TZ53_11910	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941