STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR25221.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
AJR22964.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.566
AJR23211.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.552
AJR22620.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.544
AJR24437.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.533
AJR25222.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
AJR23001.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.465
AJR26439.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.465
AJR26450.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.465
AJR25565.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.465
AJR25223.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.447
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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