AJR25233.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

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co-expression

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[Homology]

Score

AJR25233.1

phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)

Predicted Functional Partners:

AJR23092.1

0.567

AJR23548.1

0.482

AJR23670.1

0.444

AJR24134.1

0.425

dld

0.418

AJR24704.1

0.418

AJR25025.1

0.418

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23092.1	AJR23548.1	TZ53_04230	TZ53_07240	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR23092.1	AJR25233.1	TZ53_04230	TZ53_17360	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR23548.1	AJR23092.1	TZ53_07240	TZ53_04230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR23548.1	AJR25233.1	TZ53_07240	TZ53_17360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AJR23670.1	AJR25233.1	TZ53_08035	TZ53_17360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR24134.1	AJR24704.1	TZ53_10740	TZ53_14190	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR24134.1	AJR25025.1	TZ53_10740	TZ53_16150	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR24134.1	AJR25233.1	TZ53_10740	TZ53_17360	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR24134.1	dld	TZ53_10740	TZ53_00515	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.	0.505
AJR24704.1	AJR24134.1	TZ53_14190	TZ53_10740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR24704.1	AJR25233.1	TZ53_14190	TZ53_17360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR25025.1	AJR24134.1	TZ53_16150	TZ53_10740	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR25025.1	AJR25233.1	TZ53_16150	TZ53_17360	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR25233.1	AJR23092.1	TZ53_17360	TZ53_04230	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR25233.1	AJR23548.1	TZ53_17360	TZ53_07240	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AJR25233.1	AJR23670.1	TZ53_17360	TZ53_08035	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJR25233.1	AJR24134.1	TZ53_17360	TZ53_10740	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR25233.1	AJR24704.1	TZ53_17360	TZ53_14190	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR25233.1	AJR25025.1	TZ53_17360	TZ53_16150	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR25233.1	dld	TZ53_17360	TZ53_00515	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.	0.418