AJR25258.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25258.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)

Predicted Functional Partners:

AJR25259.1

0.789

AJR25260.1

0.776

AJR26478.1

0.773

AJR25261.1

0.450

AJR25262.1

0.450

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR25258.1	AJR25259.1	TZ53_17530	TZ53_17535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJR25258.1	AJR25260.1	TZ53_17530	TZ53_17540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR25258.1	AJR25261.1	TZ53_17530	TZ53_17550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJR25258.1	AJR25262.1	TZ53_17530	TZ53_17555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJR25258.1	AJR26478.1	TZ53_17530	TZ53_17545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR25259.1	AJR25258.1	TZ53_17535	TZ53_17530	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJR25259.1	AJR25260.1	TZ53_17535	TZ53_17540	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25259.1	AJR25261.1	TZ53_17535	TZ53_17550	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AJR25259.1	AJR25262.1	TZ53_17535	TZ53_17555	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJR25259.1	AJR26478.1	TZ53_17535	TZ53_17545	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR25260.1	AJR25258.1	TZ53_17540	TZ53_17530	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR25260.1	AJR25259.1	TZ53_17540	TZ53_17535	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25260.1	AJR25261.1	TZ53_17540	TZ53_17550	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR25260.1	AJR25262.1	TZ53_17540	TZ53_17555	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJR25260.1	AJR26478.1	TZ53_17540	TZ53_17545	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR25261.1	AJR25258.1	TZ53_17550	TZ53_17530	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJR25261.1	AJR25259.1	TZ53_17550	TZ53_17535	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AJR25261.1	AJR25260.1	TZ53_17550	TZ53_17540	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR25261.1	AJR25262.1	TZ53_17550	TZ53_17555	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR25261.1	AJR26478.1	TZ53_17550	TZ53_17545	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472