Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25259.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)    
Predicted Functional Partners:
AJR25261.1
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.874
AJR23546.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.856
AJR26479.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
AJR25264.1
Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.786
AJR25258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AJR25260.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
AJR25267.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
AJR23356.1
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
AJR26478.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
AJR24423.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.773
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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