AJR25295.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR25295.1

Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Predicted Functional Partners:

AJR25294.1

0.511

AJR23104.1

0.461

AJR24169.1

0.461

AJR24163.1

0.435

AJR24062.1

0.433

AJR23103.1

0.409

AJR24168.1

0.409

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23103.1	AJR23104.1	TZ53_04295	TZ53_04300	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AJR23103.1	AJR24163.1	TZ53_04295	TZ53_10900	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.590
AJR23103.1	AJR25295.1	TZ53_04295	TZ53_17750	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR23104.1	AJR23103.1	TZ53_04300	TZ53_04295	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.847
AJR23104.1	AJR24163.1	TZ53_04300	TZ53_10900	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.543
AJR23104.1	AJR25295.1	TZ53_04300	TZ53_17750	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJR24062.1	AJR25295.1	TZ53_10345	TZ53_17750	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AJR24163.1	AJR23103.1	TZ53_10900	TZ53_04295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.590
AJR24163.1	AJR23104.1	TZ53_10900	TZ53_04300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AJR24163.1	AJR24168.1	TZ53_10900	TZ53_10950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR24163.1	AJR24169.1	TZ53_10900	TZ53_10955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AJR24163.1	AJR25295.1	TZ53_10900	TZ53_17750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR24168.1	AJR24163.1	TZ53_10950	TZ53_10900	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.590
AJR24168.1	AJR24169.1	TZ53_10950	TZ53_10955	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AJR24168.1	AJR25295.1	TZ53_10950	TZ53_17750	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AJR24169.1	AJR24163.1	TZ53_10955	TZ53_10900	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.543
AJR24169.1	AJR24168.1	TZ53_10955	TZ53_10950	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AJR24169.1	AJR25295.1	TZ53_10955	TZ53_17750	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJR25294.1	AJR25295.1	TZ53_17745	TZ53_17750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJR25295.1	AJR23103.1	TZ53_17750	TZ53_04295	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.409