Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25308.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
AJR25737.1
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.
     
  0.698
AJR22542.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.666
dinB
DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
   
 
  0.647
AJR25917.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.647
AJR23149.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.645
AJR26044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.645
AJR24434.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
AJR25290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
AJR25307.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
AJR22898.1
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.615
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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