AJR25360.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25360.1

Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)

Predicted Functional Partners:

AJR25519.1

0.943

AJR26310.1

0.942

AJR24243.1

0.942

AJR25465.1

0.933

AJR25851.1

0.927

AJR22930.1

0.920

gshB

0.919

AJR25737.1

0.919

AJR25498.1

0.908

AJR22592.1

0.904

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22592.1	AJR22930.1	TZ53_01105	TZ53_03285	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22592.1	AJR24243.1	TZ53_01105	TZ53_11420	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22592.1	AJR25360.1	TZ53_01105	TZ53_18150	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJR22592.1	AJR25465.1	TZ53_01105	TZ53_18740	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AJR22592.1	AJR25498.1	TZ53_01105	TZ53_18920	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.907
AJR22592.1	AJR25519.1	TZ53_01105	TZ53_19055	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.917
AJR22592.1	AJR25737.1	TZ53_01105	TZ53_20305	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.910
AJR22592.1	AJR25851.1	TZ53_01105	TZ53_20990	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR22592.1	AJR26310.1	TZ53_01105	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJR22592.1	gshB	TZ53_01105	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.907
AJR22930.1	AJR22592.1	TZ53_03285	TZ53_01105	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22930.1	AJR24243.1	TZ53_03285	TZ53_11420	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR22930.1	AJR25360.1	TZ53_03285	TZ53_18150	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22930.1	AJR25465.1	TZ53_03285	TZ53_18740	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22930.1	AJR25498.1	TZ53_03285	TZ53_18920	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.907
AJR22930.1	AJR25519.1	TZ53_03285	TZ53_19055	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.939
AJR22930.1	AJR25737.1	TZ53_03285	TZ53_20305	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.918
AJR22930.1	AJR25851.1	TZ53_03285	TZ53_20990	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22930.1	AJR26310.1	TZ53_03285	TZ53_10070	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22930.1	gshB	TZ53_03285	TZ53_01185	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family.	0.933