AJR25371.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25371.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)

Predicted Functional Partners:

AJR25410.1

0.841

AJR26189.1

0.819

AJR23570.1

0.819

AJR23894.1

0.819

AJR25188.1

0.819

AJR25677.1

0.819

AJR25367.1

0.767

AJR25372.1

0.723

AJR25373.1

0.722

AJR24969.1

0.708

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23570.1	AJR23894.1	TZ53_07420	TZ53_09325	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR23570.1	AJR24969.1	TZ53_07420	TZ53_15785	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AJR23570.1	AJR25188.1	TZ53_07420	TZ53_17085	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.744
AJR23570.1	AJR25367.1	TZ53_07420	TZ53_18185	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR23570.1	AJR25371.1	TZ53_07420	TZ53_18205	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR23570.1	AJR25410.1	TZ53_07420	TZ53_18405	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23570.1	AJR25677.1	TZ53_07420	TZ53_19970	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23570.1	AJR26189.1	TZ53_07420	TZ53_05545	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR23894.1	AJR23570.1	TZ53_09325	TZ53_07420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.744
AJR23894.1	AJR24969.1	TZ53_09325	TZ53_15785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AJR23894.1	AJR25188.1	TZ53_09325	TZ53_17085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.744
AJR23894.1	AJR25367.1	TZ53_09325	TZ53_18185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR23894.1	AJR25371.1	TZ53_09325	TZ53_18205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR23894.1	AJR25410.1	TZ53_09325	TZ53_18405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23894.1	AJR25677.1	TZ53_09325	TZ53_19970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJR23894.1	AJR26189.1	TZ53_09325	TZ53_05545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR24969.1	AJR23570.1	TZ53_15785	TZ53_07420	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.468
AJR24969.1	AJR23894.1	TZ53_15785	TZ53_09325	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AJR24969.1	AJR25188.1	TZ53_15785	TZ53_17085	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.468
AJR24969.1	AJR25371.1	TZ53_15785	TZ53_18205	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708