AJR25389.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25389.1

Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)

Predicted Functional Partners:

AJR25390.1

0.775

AJR25388.1

0.732

AJR25391.1

0.489

AJR23057.1

0.430

AJR25392.1

0.408

AJR23434.1

0.407

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23057.1	AJR25389.1	TZ53_04055	TZ53_18300	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR23434.1	AJR25389.1	TZ53_06540	TZ53_18300	Trehalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AJR25388.1	AJR25389.1	TZ53_18295	TZ53_18300	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AJR25388.1	AJR25390.1	TZ53_18295	TZ53_18305	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AJR25388.1	AJR25391.1	TZ53_18295	TZ53_18310	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AJR25389.1	AJR23057.1	TZ53_18300	TZ53_04055	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR25389.1	AJR23434.1	TZ53_18300	TZ53_06540	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Trehalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AJR25389.1	AJR25388.1	TZ53_18300	TZ53_18295	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.732
AJR25389.1	AJR25390.1	TZ53_18300	TZ53_18305	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR25389.1	AJR25391.1	TZ53_18300	TZ53_18310	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJR25389.1	AJR25392.1	TZ53_18300	TZ53_18315	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AJR25390.1	AJR25388.1	TZ53_18305	TZ53_18295	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.714
AJR25390.1	AJR25389.1	TZ53_18305	TZ53_18300	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR25390.1	AJR25391.1	TZ53_18305	TZ53_18310	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJR25390.1	AJR25392.1	TZ53_18305	TZ53_18315	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AJR25391.1	AJR25388.1	TZ53_18310	TZ53_18295	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.455
AJR25391.1	AJR25389.1	TZ53_18310	TZ53_18300	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJR25391.1	AJR25390.1	TZ53_18310	TZ53_18305	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJR25391.1	AJR25392.1	TZ53_18310	TZ53_18315	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR25392.1	AJR25389.1	TZ53_18315	TZ53_18300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408