AJR25391.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25391.1

Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)

Predicted Functional Partners:

AJR25338.1

0.934

AJR23962.1

0.932

AJR23592.1

0.926

AJR26466.1

0.918

AJR26136.1

0.811

pgi

0.811

AJR25685.1

0.811

eno

0.810

gapA

0.810

AJR25139.1

0.808

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23592.1	AJR25391.1	TZ53_07570	TZ53_18310	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR23962.1	AJR25391.1	TZ53_09745	TZ53_18310	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AJR23962.1	AJR26466.1	TZ53_09745	TZ53_17070	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJR25139.1	AJR25391.1	TZ53_16805	TZ53_18310	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJR25139.1	AJR26136.1	TZ53_16805	TZ53_03135	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family.	0.950
AJR25139.1	eno	TZ53_16805	TZ53_16790	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	0.798
AJR25139.1	gapA	TZ53_16805	TZ53_20640	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Glyceraldehyde-3-phosphate dehydrogenase; Required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.567
AJR25139.1	pgi	TZ53_16805	TZ53_19060	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.	0.906
AJR25338.1	AJR25391.1	TZ53_18020	TZ53_18310	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR25391.1	AJR23592.1	TZ53_18310	TZ53_07570	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR25391.1	AJR23962.1	TZ53_18310	TZ53_09745	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AJR25391.1	AJR25139.1	TZ53_18310	TZ53_16805	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.808
AJR25391.1	AJR25338.1	TZ53_18310	TZ53_18020	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AJR25391.1	AJR25685.1	TZ53_18310	TZ53_20015	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family.	0.811
AJR25391.1	AJR26136.1	TZ53_18310	TZ53_03135	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family.	0.811
AJR25391.1	AJR26466.1	TZ53_18310	TZ53_17070	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AJR25391.1	eno	TZ53_18310	TZ53_16790	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	0.810
AJR25391.1	gapA	TZ53_18310	TZ53_20640	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyceraldehyde-3-phosphate dehydrogenase; Required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.810
AJR25391.1	pgi	TZ53_18310	TZ53_19060	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.	0.811
AJR25685.1	AJR25391.1	TZ53_20015	TZ53_18310	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811