Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR25405.1Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)    
Predicted Functional Partners:
AJR25404.1
Metapyrocatechase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.706
AJR25406.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.622
AJR25403.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.566
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.564
AJR25402.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.562
AJR25401.1
FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
AJR26177.1
2-dehydro-3-deoxyglucarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.463
AJR25398.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.444
AJR22860.1
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.439
AJR22861.1
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.439
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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