AJR25508.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25508.1

Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)

Predicted Functional Partners:

AJR25507.1

0.700

AJR22964.1

0.476

AJR22620.1

0.465

AJR23001.1

0.465

AJR23211.1

0.465

AJR24437.1

0.465

AJR26439.1

0.465

AJR26450.1

0.465

AJR25565.1

0.465

AJR25509.1

0.438

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22620.1	AJR22964.1	TZ53_01280	TZ53_03470	Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.775
AJR22620.1	AJR25508.1	TZ53_01280	TZ53_19000	Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR22620.1	AJR26439.1	TZ53_01280	TZ53_15845	Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.714
AJR22964.1	AJR22620.1	TZ53_03470	TZ53_01280	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR22964.1	AJR23211.1	TZ53_03470	TZ53_04960	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR22964.1	AJR25508.1	TZ53_03470	TZ53_19000	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJR23001.1	AJR25508.1	TZ53_03670	TZ53_19000	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR23211.1	AJR22964.1	TZ53_04960	TZ53_03470	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.771
AJR23211.1	AJR25508.1	TZ53_04960	TZ53_19000	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR23211.1	AJR26439.1	TZ53_04960	TZ53_15845	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.714
AJR24437.1	AJR25508.1	TZ53_12565	TZ53_19000	Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR25507.1	AJR25508.1	TZ53_18995	TZ53_19000	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AJR25508.1	AJR22620.1	TZ53_19000	TZ53_01280	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR25508.1	AJR22964.1	TZ53_19000	TZ53_03470	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.476
AJR25508.1	AJR23001.1	TZ53_19000	TZ53_03670	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR25508.1	AJR23211.1	TZ53_19000	TZ53_04960	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR25508.1	AJR24437.1	TZ53_19000	TZ53_12565	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AJR25508.1	AJR25507.1	TZ53_19000	TZ53_18995	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.700
AJR25508.1	AJR25509.1	TZ53_19000	TZ53_19005	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR25508.1	AJR25565.1	TZ53_19000	TZ53_19335	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465