STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR25530.1Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)    
Predicted Functional Partners:
AJR25531.1
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
AJR25287.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
AJR25837.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
AJR25818.1
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.832
AJR23153.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.815
AJR23204.1
Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.803
AJR23185.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.793
polA
DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.751
AJR24434.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.723
AJR25290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.723
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.