AJR25564.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25564.1

ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)

Predicted Functional Partners:

AJR25565.1

0.958

AJR23002.1

0.920

AJR23001.1

0.824

AJR26450.1

0.760

AJR25064.1

0.734

AJR25063.1

0.710

AJR23000.1

0.645

AJR22664.1

0.628

AJR25667.1

0.628

cobQ

0.429

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22664.1	AJR23002.1	TZ53_01540	TZ53_03675	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR22664.1	AJR25564.1	TZ53_01540	TZ53_19330	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR23000.1	AJR23001.1	TZ53_03665	TZ53_03670	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJR23000.1	AJR23002.1	TZ53_03665	TZ53_03675	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AJR23000.1	AJR25064.1	TZ53_03665	TZ53_16365	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR23000.1	AJR25564.1	TZ53_03665	TZ53_19330	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AJR23000.1	AJR25565.1	TZ53_03665	TZ53_19335	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJR23000.1	AJR26450.1	TZ53_03665	TZ53_16115	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR23001.1	AJR23000.1	TZ53_03670	TZ53_03665	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJR23001.1	AJR23002.1	TZ53_03670	TZ53_03675	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23001.1	AJR25063.1	TZ53_03670	TZ53_16355	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AJR23001.1	AJR25064.1	TZ53_03670	TZ53_16365	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR23001.1	AJR25564.1	TZ53_03670	TZ53_19330	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR23002.1	AJR22664.1	TZ53_03675	TZ53_01540	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR23002.1	AJR23000.1	TZ53_03675	TZ53_03665	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AJR23002.1	AJR23001.1	TZ53_03675	TZ53_03670	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23002.1	AJR25063.1	TZ53_03675	TZ53_16355	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR23002.1	AJR25064.1	TZ53_03675	TZ53_16365	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR23002.1	AJR25564.1	TZ53_03675	TZ53_19330	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR23002.1	AJR25565.1	TZ53_03675	TZ53_19335	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824