AJR25614.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25614.1

Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (408 aa)

Predicted Functional Partners:

AJR25613.1

0.907

polA

0.897

rplF

0.693

AJR23268.1

0.690

AJR26203.1

0.689

AJR24513.1

0.685

AJR25430.1

0.680

AJR25213.1

0.636

AJR23684.1

0.631

AJR25190.1

0.616

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23268.1	AJR25614.1	TZ53_05355	TZ53_19625	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.690
AJR23684.1	AJR25614.1	TZ53_08110	TZ53_19625	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.631
AJR23684.1	rplF	TZ53_08110	TZ53_11375	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.688
AJR24513.1	AJR25614.1	TZ53_13050	TZ53_19625	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.685
AJR25190.1	AJR25613.1	TZ53_17095	TZ53_19620	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR25190.1	AJR25614.1	TZ53_17095	TZ53_19625	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.616
AJR25190.1	rplF	TZ53_17095	TZ53_11375	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.682
AJR25213.1	AJR25614.1	TZ53_17235	TZ53_19625	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.636
AJR25430.1	AJR25614.1	TZ53_18515	TZ53_19625	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.680
AJR25613.1	AJR25190.1	TZ53_19620	TZ53_17095	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR25613.1	AJR25614.1	TZ53_19620	TZ53_19625	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.907
AJR25614.1	AJR23268.1	TZ53_19625	TZ53_05355	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJR25614.1	AJR23684.1	TZ53_19625	TZ53_08110	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AJR25614.1	AJR24513.1	TZ53_19625	TZ53_13050	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
AJR25614.1	AJR25190.1	TZ53_19625	TZ53_17095	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
AJR25614.1	AJR25213.1	TZ53_19625	TZ53_17235	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AJR25614.1	AJR25430.1	TZ53_19625	TZ53_18515	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AJR25614.1	AJR25613.1	TZ53_19625	TZ53_19620	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJR25614.1	AJR26203.1	TZ53_19625	TZ53_05790	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR25614.1	polA	TZ53_19625	TZ53_02645	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.897