AJR25639.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR25639.1

Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)

Predicted Functional Partners:

AJR22759.1

0.856

AJR26399.1

0.855

AJR25169.1

0.855

AJR25284.1

0.853

AJR26278.1

0.852

AJR24690.1

0.840

AJR26209.1

0.807

AJR26390.1

0.775

AJR25909.1

0.761

AJR25168.1

0.751

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22759.1	AJR25168.1	TZ53_02195	TZ53_16970	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AJR22759.1	AJR25639.1	TZ53_02195	TZ53_19755	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AJR22759.1	AJR25909.1	TZ53_02195	TZ53_21340	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR22759.1	AJR26209.1	TZ53_02195	TZ53_05940	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJR22759.1	AJR26390.1	TZ53_02195	TZ53_14100	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR24690.1	AJR25168.1	TZ53_14090	TZ53_16970	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AJR24690.1	AJR25639.1	TZ53_14090	TZ53_19755	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJR24690.1	AJR25909.1	TZ53_14090	TZ53_21340	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AJR24690.1	AJR26209.1	TZ53_14090	TZ53_05940	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AJR24690.1	AJR26390.1	TZ53_14090	TZ53_14100	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AJR25168.1	AJR22759.1	TZ53_16970	TZ53_02195	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.555
AJR25168.1	AJR24690.1	TZ53_16970	TZ53_14090	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.553
AJR25168.1	AJR25169.1	TZ53_16970	TZ53_16980	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.926
AJR25168.1	AJR25284.1	TZ53_16970	TZ53_17685	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.575
AJR25168.1	AJR25639.1	TZ53_16970	TZ53_19755	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJR25168.1	AJR25909.1	TZ53_16970	TZ53_21340	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR25168.1	AJR26278.1	TZ53_16970	TZ53_08895	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.532
AJR25168.1	AJR26399.1	TZ53_16970	TZ53_14420	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AJR25169.1	AJR25168.1	TZ53_16980	TZ53_16970	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR25169.1	AJR25639.1	TZ53_16980	TZ53_19755	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855