AJR25668.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25668.1

Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)

Predicted Functional Partners:

psd

0.927

AJR23684.1

0.905

AJR24825.1

0.872

AJR25666.1

0.587

AJR25667.1

0.587

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23684.1	AJR24825.1	TZ53_08110	TZ53_14935	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.833
AJR23684.1	AJR25668.1	TZ53_08110	TZ53_19915	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJR23684.1	psd	TZ53_08110	TZ53_14930	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	0.928
AJR24825.1	AJR23684.1	TZ53_14935	TZ53_08110	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AJR24825.1	AJR25668.1	TZ53_14935	TZ53_19915	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJR24825.1	psd	TZ53_14935	TZ53_14930	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	0.998
AJR25666.1	AJR25667.1	TZ53_19905	TZ53_19910	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR25666.1	AJR25668.1	TZ53_19905	TZ53_19915	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR25667.1	AJR25666.1	TZ53_19910	TZ53_19905	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR25667.1	AJR25668.1	TZ53_19910	TZ53_19915	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR25668.1	AJR23684.1	TZ53_19915	TZ53_08110	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJR25668.1	AJR24825.1	TZ53_19915	TZ53_14935	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.872
AJR25668.1	AJR25666.1	TZ53_19915	TZ53_19905	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR25668.1	AJR25667.1	TZ53_19915	TZ53_19910	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AJR25668.1	psd	TZ53_19915	TZ53_14930	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	0.927
psd	AJR23684.1	TZ53_14930	TZ53_08110	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
psd	AJR24825.1	TZ53_14930	TZ53_14935	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	CDP-diacylglycerol O-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.998
psd	AJR25668.1	TZ53_14930	TZ53_19915	Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).	Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927