Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR26522.1Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)    
Predicted Functional Partners:
AJR23958.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family.
 
 0.762
AJR25456.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.730
AJR23613.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family.
 
 0.726
AJR25503.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.652
AJR24763.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.632
AJR25689.1
Delta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.
     
 0.631
AJR22756.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.627
AJR25282.1
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.621
AJR25688.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
AJR23559.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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