AJR25700.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR25700.1

Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)

Predicted Functional Partners:

AJR25699.1

0.998

AJR25698.1

0.926

AJR25697.1

0.892

AJR25694.1

0.890

AJR25696.1

0.889

AJR25695.1

0.886

AJR25693.1

0.743

AJR22547.1

0.630

AJR26332.1

0.623

AJR23899.1

0.616

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR23899.1	TZ53_00840	TZ53_09350	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22547.1	AJR25699.1	TZ53_00840	TZ53_20090	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
AJR22547.1	AJR25700.1	TZ53_00840	TZ53_20095	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AJR22547.1	AJR26332.1	TZ53_00840	TZ53_11245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23899.1	AJR22547.1	TZ53_09350	TZ53_00840	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23899.1	AJR25699.1	TZ53_09350	TZ53_20090	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AJR23899.1	AJR25700.1	TZ53_09350	TZ53_20095	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
AJR23899.1	AJR26332.1	TZ53_09350	TZ53_11245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25693.1	AJR25694.1	TZ53_20060	TZ53_20065	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR25693.1	AJR25695.1	TZ53_20060	TZ53_20070	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.741
AJR25693.1	AJR25696.1	TZ53_20060	TZ53_20075	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR25693.1	AJR25697.1	TZ53_20060	TZ53_20080	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AJR25693.1	AJR25698.1	TZ53_20060	TZ53_20085	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AJR25693.1	AJR25699.1	TZ53_20060	TZ53_20090	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJR25693.1	AJR25700.1	TZ53_20060	TZ53_20095	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR25694.1	AJR25693.1	TZ53_20065	TZ53_20060	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJR25694.1	AJR25695.1	TZ53_20065	TZ53_20070	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.999
AJR25694.1	AJR25696.1	TZ53_20065	TZ53_20075	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25694.1	AJR25697.1	TZ53_20065	TZ53_20080	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR25694.1	AJR25698.1	TZ53_20065	TZ53_20085	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surfeit locus 1 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957