AJR25753.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

AJR25753.1

Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)

Predicted Functional Partners:

AJR25754.1

0.965

AJR24600.1

0.785

AJR23593.1

0.689

AJR25752.1

0.670

AJR25749.1

0.625

AJR23672.1

0.595

AJR25750.1

0.557

AJR25751.1

0.526

AJR22724.1

0.523

AJR23387.1

0.523

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22724.1	AJR25753.1	TZ53_01925	TZ53_20395	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AJR23387.1	AJR25753.1	TZ53_06180	TZ53_20395	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AJR23593.1	AJR25750.1	TZ53_07575	TZ53_20375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR23593.1	AJR25753.1	TZ53_07575	TZ53_20395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR23672.1	AJR24600.1	TZ53_08045	TZ53_13570	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper metallochaperone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AJR23672.1	AJR25753.1	TZ53_08045	TZ53_20395	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
AJR24600.1	AJR23672.1	TZ53_13570	TZ53_08045	Copper metallochaperone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AJR24600.1	AJR25753.1	TZ53_13570	TZ53_20395	Copper metallochaperone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR25749.1	AJR25750.1	TZ53_20370	TZ53_20375	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR25749.1	AJR25751.1	TZ53_20370	TZ53_20380	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	FecI sigma-24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.687
AJR25749.1	AJR25752.1	TZ53_20370	TZ53_20385	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR25749.1	AJR25753.1	TZ53_20370	TZ53_20395	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJR25749.1	AJR25754.1	TZ53_20370	TZ53_20400	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJR25750.1	AJR23593.1	TZ53_20375	TZ53_07575	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
AJR25750.1	AJR25749.1	TZ53_20375	TZ53_20370	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR25750.1	AJR25751.1	TZ53_20375	TZ53_20380	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FecI sigma-24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.700
AJR25750.1	AJR25752.1	TZ53_20375	TZ53_20385	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
AJR25750.1	AJR25753.1	TZ53_20375	TZ53_20395	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR25750.1	AJR25754.1	TZ53_20375	TZ53_20400	Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR25751.1	AJR25749.1	TZ53_20380	TZ53_20370	FecI sigma-24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687