Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR25756.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)    
Predicted Functional Partners:
AJR26529.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.716
AJR25757.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
AJR23603.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.507
AJR26129.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.492
AJR25204.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.468
AJR26522.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.465
AJR23807.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.460
AJR25503.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.452
AJR22970.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.447
AJR24086.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.446
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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