AJR25758.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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[Homology]

Score

AJR25758.1

Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)

Predicted Functional Partners:

AJR25759.1

0.952

AJR25760.1

0.892

AJR24131.1

0.780

AJR24699.1

0.747

AJR24768.1

0.627

AJR25486.1

0.614

AJR22802.1

0.559

fliP

0.523

AJR26029.1

0.518

AJR23903.1

0.479

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22802.1	AJR23903.1	TZ53_02470	TZ53_09370	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR22802.1	AJR24699.1	TZ53_02470	TZ53_14155	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22802.1	AJR24768.1	TZ53_02470	TZ53_14585	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22802.1	AJR25758.1	TZ53_02470	TZ53_20430	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJR22802.1	AJR26029.1	TZ53_02470	TZ53_22075	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AJR22802.1	fliP	TZ53_02470	TZ53_02455	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein flip; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.997
AJR23903.1	AJR22802.1	TZ53_09370	TZ53_02470	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR23903.1	AJR24699.1	TZ53_09370	TZ53_14155	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AJR23903.1	AJR24768.1	TZ53_09370	TZ53_14585	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR23903.1	AJR25758.1	TZ53_09370	TZ53_20430	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AJR23903.1	AJR26029.1	TZ53_09370	TZ53_22075	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23903.1	fliP	TZ53_09370	TZ53_02455	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein flip; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.892
AJR24131.1	AJR24699.1	TZ53_10720	TZ53_14155	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR24131.1	AJR24768.1	TZ53_10720	TZ53_14585	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR24131.1	AJR25486.1	TZ53_10720	TZ53_18855	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
AJR24131.1	AJR25758.1	TZ53_10720	TZ53_20430	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJR24131.1	AJR26029.1	TZ53_10720	TZ53_22075	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AJR24699.1	AJR22802.1	TZ53_14155	TZ53_02470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR24699.1	AJR23903.1	TZ53_14155	TZ53_09370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AJR24699.1	AJR24131.1	TZ53_14155	TZ53_10720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.462